SubMorphology class

(Shortest import: from brian2.spatialneuron.morphology import SubMorphology)

class brian2.spatialneuron.morphology.SubMorphology(morphology, i, j)

Bases: object

A view on a subset of a section in a morphology.

Attributes

area	The membrane surface area of each compartment in this sub-section.
diameter	The diameter at the middle of each compartment in this sub-section.
distance	The total distance between the midpoint of each compartment in this sub-section and the root of the morphology.
end_x	The x coordinate at the end of each compartment in this sub-section.
end_x_	The x coordinate (as a unitless floating point number) at the end of each compartment in this sub-section.
end_y	The y coordinate at the end of each compartment in this sub-section.
end_y_	The y coordinate (as a unitless floating point number) at the end of each compartment in this sub-section.
end_z	The z coordinate at the end of each compartment in this sub-section.
end_z_	The z coordinate (as a unitless floating point number) at the end of each compartment in this sub-section.
length	The length of each compartment in this sub-section.
n	The number of compartments in this sub-section.
n_sections	The number of sections in this sub-section (always 1).
r_length_1	The geometry-dependent term to calculate the conductance between the start and the midpoint of each compartment in this sub-section.
r_length_2	The geometry-dependent term to calculate the conductance between the midpoint and the end of each compartment in this sub-section.
start_x	The x coordinate at the beginning of each compartment in this sub-section.
start_x_	The x coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section.
start_y	The y coordinate at the beginning of each compartment in this sub-section.
start_y_	The y coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section.
start_z	The x coordinate at the beginning of each compartment in this sub-section.
start_z_	The z coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section.
volume	The volume of each compartment in this sub-section.
x	The x coordinate at the midpoint of each compartment in this sub-section.
x_	The x coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section.
y	The y coordinate at the midpoint of each compartment in this sub-section.
y_	The y coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section.
z	The z coordinate at the midpoint of each compartment in this sub-section.
z_	The z coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section.

Details

area

The membrane surface area of each compartment in this sub-section.

diameter

The diameter at the middle of each compartment in this sub-section.

distance

The total distance between the midpoint of each compartment in this sub-section and the root of the morphology.

end_x

The x coordinate at the end of each compartment in this sub-section. Returns None for morphologies without coordinates.

end_x_

The x coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns None for morphologies without coordinates.

end_y

The y coordinate at the end of each compartment in this sub-section. Returns None for morphologies without coordinates.

end_y_

The y coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns None for morphologies without coordinates.

end_z

The z coordinate at the end of each compartment in this sub-section. Returns None for morphologies without coordinates.

end_z_

The z coordinate (as a unitless floating point number) at the end of each compartment in this sub-section. Returns None for morphologies without coordinates.

length

The length of each compartment in this sub-section.

n

The number of compartments in this sub-section.

n_sections

The number of sections in this sub-section (always 1).

r_length_1

The geometry-dependent term to calculate the conductance between the start and the midpoint of each compartment in this sub-section. Dividing this value by the Intracellular resistivity gives the conductance.

r_length_2

The geometry-dependent term to calculate the conductance between the midpoint and the end of each compartment in this sub-section. Dividing this value by the Intracellular resistivity gives the conductance.

start_x

The x coordinate at the beginning of each compartment in this sub-section. Returns None for morphologies without coordinates.

start_x_

The x coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns None for morphologies without coordinates.

start_y

The y coordinate at the beginning of each compartment in this sub-section. Returns None for morphologies without coordinates.

start_y_

The y coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns None for morphologies without coordinates.

start_z

The x coordinate at the beginning of each compartment in this sub-section. Returns None for morphologies without coordinates.

start_z_

The z coordinate (as a unitless floating point number) at the beginning of each compartment in this sub-section. Returns None for morphologies without coordinates.

volume

The volume of each compartment in this sub-section.

x

The x coordinate at the midpoint of each compartment in this sub-section. Returns None for morphologies without coordinates.

x_

The x coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns None for morphologies without coordinates.

y

The y coordinate at the midpoint of each compartment in this sub-section. Returns None for morphologies without coordinates.

y_

The y coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns None for morphologies without coordinates.

z

The z coordinate at the midpoint of each compartment in this sub-section. Returns None for morphologies without coordinates.

z_

The z coordinate (as a unitless floating point number) at the midpoint of each compartment in this sub-section. Returns None for morphologies without coordinates.